PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G012400.2

Common Name

B456_001G012400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 484aa MW: 53774.1 Da PI: 9.6153

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G012400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.7e-12	306	350	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f Lr+llP+ +K +Ka++L+ A eY+ sL Gorai.001G012400.2 306 HMMSERKRREKLNESFVALRSLLPSG-----TKRDKASVLTTAREYLVSL 350 8899*******************8.....8************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.53E-12	299	354	No hit	No description
SuperFamily	SSF47459	1.31E-16	300	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.11	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-14	305	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	306	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-12	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MDAVFNLDEA SRAEFLHLLM QSTGCSYICL WSYSFLQQAN GLVPGFAFKN NQPYIELREL 60 ELQNRAFHET QRQFYRVAGI KVCFQANTAA FMACRSGEIE LGSSSVVQLN MEMEMRSFFS 120 EDQLPQSTDQ NRPSSSSSSL RSLSTSSPDS SLIFTVPTTH EPAPSSLQQA TITPSSINDP 180 RRAMQAFSQT GSSIPLPTLE SENAAMTRAI LAVLTSPSSS SSSSSTPFYR NQSLPYNNYR 240 LNPKASAFKG YATGLGAGPA TTPARASLRA QAMMKRAILF YRKFNLARRE QLLRSRPGPT 300 SNQLHHMMSE RKRREKLNES FVALRSLLPS GTKRDKASVL TTAREYLVSL KAQIMELNRQ 360 KQLLEAPILP PKEGAAAIEV NDPSNERVNV RVIPVPESTS EERLADLRVT VRGERPIVDI 420 LIHLLEFLKL DRNVSLMSIE ANTGVSEFGS VNLVSLRLRI QGDGWDESTF QEAVRRLITH 480 LAQ*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MDAVFNLDEA SRAEFLHLLM QSTGCSYICL WSYSFLQQAN GLVPGFAFKN NQPYIELREL  60
ELQNRAFHET QRQFYRVAGI KVCFQANTAA FMACRSGEIE LGSSSVVQLN MEMEMRSFFS  120
EDQLPQSTDQ NRPSSSSSSL RSLSTSSPDS SLIFTVPTTH EPAPSSLQQA TITPSSINDP  180
RRAMQAFSQT GSSIPLPTLE SENAAMTRAI LAVLTSPSSS SSSSSTPFYR NQSLPYNNYR  240
LNPKASAFKG YATGLGAGPA TTPARASLRA QAMMKRAILF YRKFNLARRE QLLRSRPGPT  300
SNQLHHMMSE RKRREKLNES FVALRSLLPS GTKRDKASVL TTAREYLVSL KAQIMELNRQ  360
KQLLEAPILP PKEGAAAIEV NDPSNERVNV RVIPVPESTS EERLADLRVT VRGERPIVDI  420
LIHLLEFLKL DRNVSLMSIE ANTGVSEFGS VNLVSLRLRI QGDGWDESTF QEAVRRLITH  480
LAQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	314	ERKRRE
2	310	315	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476697.1	0.0	PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBL	A0A0D2PK71	0.0	A0A0D2PK71_GOSRA; Uncharacterized protein
STRING	Gorai.001G012400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	9e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G012400.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]