PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G017900.1

Common Name

B456_001G017900, LOC105798371

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 488aa MW: 52020.1 Da PI: 4.7259

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G017900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	253	298	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L +eY+k Lq Gorai.001G017900.1 253 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDSIIEYVKFLQ 298 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-16	246	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.94E-12	246	302	No hit	No description
PROSITE profile	PS50888	16.787	248	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-16	250	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-9	253	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-13	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MDDYLDQYFA SLSWSDVNFK ERSPWVLSEP DQPNALLPSS PISMIGSNHG MECLATQSTP 60 LGVGPQTNGE SLGLQFNAGV HSSGSLKGLQ VVGDMTTLSQ SFNEGGNVLC NGGESSEFQR 120 SLTGLETLCS IPQLWHPQPY DGLISSLPMG QTQMQSSSLQ GDNGNVDDGN INRFVEIDKF 180 LQLENLSASI NAKEKQDMQN SCYSSFPADR PMTDMMIDLP SLLQSSSPAP NKGCNGTGKP 240 QVRARRGQAT DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDSI IEYVKFLQLQ 300 VKVLSMSRLG AAGAVVPLIT DGQAEGSNGL TLTPLAMGSD GVDCSPSPEQ VVFEQEVVKL 360 MESNVTIAMQ YLQSKGLCIM PIALAAAISN GKASSSSSSG PVSEERKKFG FTNSVISNDD 420 RVHNTTTCSS SSDSGVRNSN SSNSSGTGNL SGVGIHQSTS DGNFMIEKIN GCNGTFKQEV 480 NTLCTAK*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MDDYLDQYFA SLSWSDVNFK ERSPWVLSEP DQPNALLPSS PISMIGSNHG MECLATQSTP  60
LGVGPQTNGE SLGLQFNAGV HSSGSLKGLQ VVGDMTTLSQ SFNEGGNVLC NGGESSEFQR  120
SLTGLETLCS IPQLWHPQPY DGLISSLPMG QTQMQSSSLQ GDNGNVDDGN INRFVEIDKF  180
LQLENLSASI NAKEKQDMQN SCYSSFPADR PMTDMMIDLP SLLQSSSPAP NKGCNGTGKP  240
QVRARRGQAT DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDSI IEYVKFLQLQ  300
VKVLSMSRLG AAGAVVPLIT DGQAEGSNGL TLTPLAMGSD GVDCSPSPEQ VVFEQEVVKL  360
MESNVTIAMQ YLQSKGLCIM PIALAAAISN GKASSSSSSG PVSEERKKFG FTNSVISNDD  420
RVHNTTTCSS SSDSGVRNSN SSNSSGTGNL SGVGIHQSTS DGNFMIEKIN GCNGTFKQEV  480
NTLCTAK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483898.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Refseq	XP_012483967.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Refseq	XP_012484036.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Refseq	XP_012484101.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Refseq	XP_012484157.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBL	A0A0D2PTG5	0.0	A0A0D2PTG5_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5SDA2	0.0	A0A2P5SDA2_GOSBA; Uncharacterized protein
STRING	Gorai.001G017900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16266	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	7e-59	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Gorai.001G017900.1
Entrez Gene	105798371

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]