PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G019100.1
Common NameB456_001G019100, LOC105799858
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 215aa    MW: 23623.7 Da    PI: 4.8786
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G019100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-192273156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        s+ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g+
  Gorai.001G019100.1 22 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAAQYCLRGN 73
                        89*****999.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-272282No hitNo description
SuperFamilySSF541711.44E-202281IPR016177DNA-binding domain
PfamPF008475.6E-122272IPR001471AP2/ERF domain
SMARTSM003804.5E-292386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-282381IPR001471AP2/ERF domain
PROSITE profilePS5103221.6282380IPR001471AP2/ERF domain
PRINTSPR003675.1E-92435IPR001471AP2/ERF domain
PRINTSPR003675.1E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVKPTQTEAT TNHGSDPTGN GSKYKGVRKR KWGKWVSEIR LPNSRERIWL GSYDSPEKAA  60
RAFDAAQYCL RGNGAKFNFP DNPPDIAGAT SLGPHEIQAV ASRFANESVN NNNAMTDRTV  120
EQYTTSSSVT VSDGGVATQV ESHETRTDWS SFLSMLDSNE GMSSDYGFYP GLGHLPGDHF  180
YPPPPPPPVD EYMDDDQNYV GDGFSQHSSF LWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1523801472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9441690.0KJ944169.1 Gossypium hirsutum cultivar Reba B50 ethylene-responsive transcription factor ERF-IIb1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486132.11e-160PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC25e-53ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D2QI681e-159A0A0D2QI68_GOSRA; Uncharacterized protein
STRINGGorai.001G019100.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]