PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G020600.2
Common NameB456_001G020600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 235aa    MW: 26444.8 Da    PI: 6.4299
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G020600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed++l  +++ +G g W+  +++ g++R++k+c++rw++yl
  Gorai.001G020600.2 14 KGAWTALEDKILTSYIHVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding51.22.8e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Gorai.001G020600.2  67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                         78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.637961IPR017930Myb domain
SuperFamilySSF466891.56E-2712108IPR009057Homeodomain-like
SMARTSM007175.5E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-221568IPR009057Homeodomain-like
CDDcd001675.05E-91661No hitNo description
PROSITE profilePS5129422.86262116IPR017930Myb domain
SMARTSM007172.6E-1466114IPR001005SANT/Myb domain
PfamPF002491.9E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2369113IPR009057Homeodomain-like
CDDcd001673.64E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRSPCCSKE GLNKGAWTAL EDKILTSYIH VHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAIRCSSKV  120
MVPLQPPATH QHGQHHYTNN NEEMGGGIST IEAHNGIQML ESLYSDGGSN LLSFEINELL  180
KSHDGGEFEE NPMQQHFPLG EAMLKDWSTC PCLDDNGATD LESLAFLLDT DEWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241211225124MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362840.0AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488054.11e-168PREDICTED: transcription repressor MYB6-like
TrEMBLA0A0D2LTN31e-173A0A0D2LTN3_GOSRA; Uncharacterized protein
STRINGGorai.001G020600.11e-168(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.15e-63myb domain protein 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]