PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G021500.1

Common Name

B456_001G021500, LOC105802365

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 174aa MW: 19948.4 Da PI: 5.1092

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G021500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	4.9e-31	112	170	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YY+C +gCpvkk+ver+ edp++v++tYeg Hnh+ Gorai.001G021500.1 112 LDDGYRWRKYGKKMVKNSPNPRNYYKCLIEGCPVKKRVERDGEDPSYVITTYEGIHNHQ 170 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.3E-33	98	171	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-28	105	170	IPR003657	WRKY domain
PROSITE profile	PS50811	29.953	107	172	IPR003657	WRKY domain
SMART	SM00774	3.5E-35	112	171	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	113	170	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MHILLFSFII EMFNNKFGLP NSPESGCAGR TKFEFPDAYF DGWLHEGYRG AMISGTIENP 60 FNQANELFDE FACNGSLLIP APDDNRESET VGEMSEFKER YAFKTKSEIE ILDDGYRWRK 120 YGKKMVKNSP NPRNYYKCLI EGCPVKKRVE RDGEDPSYVI TTYEGIHNHQ SVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-27	102	169	7	74	Probable WRKY transcription factor 4
2lex_A	9e-27	102	169	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669805	0.0	KF669805.1 Gossypium hirsutum WRKY transcription factor 114 (WRKY114) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489455.1	1e-128	PREDICTED: probable WRKY transcription factor 50 isoform X1
Refseq	XP_016744828.1	1e-128	PREDICTED: probable WRKY transcription factor 50 isoform X1
TrEMBL	A0A0D2PSV2	1e-127	A0A0D2PSV2_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8P3A6	1e-127	A0A1U8P3A6_GOSHI; probable WRKY transcription factor 50 isoform X1
STRING	Gorai.001G021500.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	3e-42	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Gorai.001G021500.1
Entrez Gene	105802365

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]