PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G024300.4

Common Name

B456_001G024300, LOC105804536

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 199aa MW: 21383.4 Da PI: 4.1852

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G024300.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.2e-09	2	26	20	46
TTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46 G++ W++Ia+ ++ gRt++++k++w++ Gorai.001G024300.4 2 GSR-WSLIASQLP-GRTDNDVKNYWNT 26 788.*******.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.114	1	32	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-14	2	37	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.5E-8	2	35	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-7	2	26	IPR001005	SANT/Myb domain
CDD	cd00167	9.68E-7	4	26	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGSRWSLIAS QLPGRTDNDV KNYWNTKLKK KLLAGKSSFN VENNGGLLNA NNNNIPTQPL 60 PYNLDYSTTS LPILSDVSYG FSVSNCSTSQ NMGLDPVMQF STPDTITNLS QSGPNLDNSH 120 NNIVVVSSSQ EGSALSDSTG NGYGEDTGSI ILMDDQQFSY EFPYEFVNGV LAGPSFEFSH 180 GDIKTSQGLN QSVATNPY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492688.1	1e-140	PREDICTED: transcription factor MYB3-like
TrEMBL	A0A0D2N4Q1	1e-139	A0A0D2N4Q1_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2PKT5	1e-140	A0A0D2PKT5_GOSRA; Uncharacterized protein
STRING	Gorai.001G024300.1	1e-140	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	3e-11	myb domain protein 87

Link Out ? help Back to Top
Phytozome	Gorai.001G024300.4
Entrez Gene	105804536

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]