PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G037700.4
Common NameB456_001G037700, LOC105774121
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 240aa    MW: 26138.4 Da    PI: 8.3129
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G037700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.3e-3191149259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK+ k+++ pr+Y++C++a +Cpvkkkv+rsaedp+v++ tYegeHnh 
  Gorai.001G037700.4  91 RDGYQWRKYGQKVTKDNPSPRAYFKCSFApNCPVKKKVQRSAEDPSVLVATYEGEHNHA 149
                         7***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.11885151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-3085151IPR003657WRKY domain
SuperFamilySSF1182902.09E-2687151IPR003657WRKY domain
SMARTSM007741.5E-3590150IPR003657WRKY domain
PfamPF031061.1E-2592148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLTALGHCYN DLQNKFTELV TINSENEVST SKKRKAECED YSTNMIGFSN GNKETSCSDE  60
DSCKVPRECI KTTISRIYVR TNPSDNSLIV RDGYQWRKYG QKVTKDNPSP RAYFKCSFAP  120
NCPVKKKVQR SAEDPSVLVA TYEGEHNHAH PSPSEVAILS PKCSAKPVSC ASTRASAPTT  180
TLELMQPEGY GDGAKKKTQE VDDAPAAIQQ VLVQHMAASL TRNPNFTAAL AAAISGRVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-22891521678Probable WRKY transcription factor 4
2lex_A8e-22891521678Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310940.0KF031094.1 Gossypium hirsutum WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451971.11e-180PREDICTED: WRKY transcription factor 18-like isoform X1
RefseqXP_012452038.11e-180PREDICTED: WRKY transcription factor 18-like isoform X1
RefseqXP_012452113.11e-180PREDICTED: WRKY transcription factor 18-like isoform X2
TrEMBLA0A0D2N5731e-179A0A0D2N573_GOSRA; Uncharacterized protein
TrEMBLA0A0D2PLG61e-179A0A0D2PLG6_GOSRA; Uncharacterized protein
TrEMBLA0A0D2QKA51e-179A0A0D2QKA5_GOSRA; Uncharacterized protein
STRINGGorai.001G037700.11e-179(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.13e-66WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]