PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G037800.1

Common Name

B456_001G037800, LOC105774343

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 262aa MW: 29031.6 Da PI: 7.2043

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G037800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.3	1.8e-29	103	162	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ k ++fpr+Y+rC++a gCpvkkkv+r+ ed++++ tYeg+Hnhe Gorai.001G037800.1 103 VKDGFQWRKYGQKVTKHNPFPRAYFRCSMApGCPVKKKVQRCMEDKNFLMATYEGRHNHE 162 58*************************99**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-29	96	162	IPR003657	WRKY domain
PROSITE profile	PS50811	26.142	98	164	IPR003657	WRKY domain
SuperFamily	SSF118290	9.02E-26	99	163	IPR003657	WRKY domain
SMART	SM00774	1.6E-33	103	163	IPR003657	WRKY domain
Pfam	PF03106	3.3E-24	104	162	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDVPSSVKDK VEGVEAELEQ LQKENAALRL MLQVMSNKYK MLSEAYFRES NSQVPTICRG 60 LTRFDLCEDQ HSHKNILIPQ LQLAANSSQV FVETDPRDES HIVKDGFQWR KYGQKVTKHN 120 PFPRAYFRCS MAPGCPVKKK VQRCMEDKNF LMATYEGRHN HEVNPSIGQS LCSPTSSATT 180 SISGFPNSVL DNPLRSAITL DLNLSSENSS GNGNGNDDDY NNKRSMEDHV AASLAKDPSF 240 TLALAAAVAR SITEHPKPPT N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-22	102	165	13	75	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438465	0.0	KM438465.1 Gossypium aridum WRKY52 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452306.1	0.0	PREDICTED: WRKY transcription factor 18-like
TrEMBL	A0A0D2PU91	0.0	A0A0D2PU91_GOSRA; Uncharacterized protein
STRING	Gorai.001G037800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24693	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31800.2	2e-36	WRKY DNA-binding protein 18

Link Out ? help Back to Top
Phytozome	Gorai.001G037800.1
Entrez Gene	105774343

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]