PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G042700.1

Common Name

B456_001G042700, LOC105779035

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 168aa MW: 18805.3 Da PI: 8.4042

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G042700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	209	1.7e-64	8	159	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + +++++++ ++++ +t+ Gorai.001G042700.1 8 APEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV---------QVGASYATQDYRTDLGSSSKCNTKF 89 79*******************************************9999999884.........3334444455555555555555556 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ s+n +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Gorai.001G042700.1 90 SMRAPSKNATEERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 159 66555677777655....89**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.2E-72	8	159	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-8	102	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	107	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSTCTNLAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQVGASY ATQDYRTDLG SSSKCNTKFS MRAPSKNATE ERVVNRPPEK RQRVPSAYNQ 120 FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LENQKSN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458263.1	1e-124	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012458307.1	1e-124	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012458353.1	1e-124	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012458426.1	1e-124	PREDICTED: axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	3e-87	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0D2N1X0	1e-123	A0A0D2N1X0_GOSRA; Uncharacterized protein
STRING	Gorai.001G042700.1	1e-123	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-89	YABBY family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G042700.1
Entrez Gene	105779035

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]