PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G047300.1

Common Name

B456_001G047300, LOC105784269

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 248aa MW: 27426.9 Da PI: 8.4509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G047300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	70	121	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ a +e+Er RR+++ + +++Lr+llP+ + ++K ++ +Av+YI ++ Gorai.001G047300.1 70 KKIARKEIERERRQQMGKLYQKLRSLLPPeS---IKGKRAASDHMNEAVNYITYM 121 577899*********************66...9***************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-11	67	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.03	69	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-8	70	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.37E-6	70	125	No hit	No description
Pfam	PF00010	9.2E-8	71	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0086	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MFPSDQIDDY LYEISDIPHH EDFVRQNLTS GESVEGSHLT RRTGKGRGLK SLAVANNNDA 60 NYAVSANDAK KIARKEIERE RRQQMGKLYQ KLRSLLPPES IKGKRAASDH MNEAVNYITY 120 MKKRIGELSI KRDKVKKLSN RSALDLGSSS ASSSGINSCV VVHPFRGGVE IMISSGFGDQ 180 SWHLSTVLQA ILEEGLDVVR CVSSQTIEGL LHTVQSEVTD PTQIDLSRLQ TKLNDLISYY 240 DNAGCGR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465591.1	0.0	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A0D2PLW0	0.0	A0A0D2PLW0_GOSRA; Uncharacterized protein
STRING	Gorai.001G047300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17143	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	4e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G047300.1
Entrez Gene	105784269

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]