PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G049200.1
Common NameB456_001G049200, LOC105770346
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 206aa    MW: 22589.9 Da    PI: 8.4909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G049200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024828323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++C ++Fs+   L  H+++H
  Gorai.001G049200.1  8 CTICLRRFSNGKALGAHMKSH 28
                        ********************9 PP
2zf-C2H214.20.00012150172123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+++F+++  L  H  +H
  Gorai.001G049200.1 150 YKCGTCNRTFRSHQALGGHRASH 172
                         9***************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.8628IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162633IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-7728No hitNo description
PfamPF139125.2E-7728IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-7145172No hitNo description
PfamPF139122.1E-8149173IPR007087Zinc finger, C2H2
SMARTSM003550.063150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076150177IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDQNSRLCTI CLRRFSNGKA LGAHMKSHFG RFSSPSSTSS SNPPLASTKH ELSTESTESA  60
KYPTGKRSKT LRKFSSNMAM TGSPSDSVSS PLSVEDAALC LLMLSRDQRS NNPKLTQGYE  120
ISDAGVGSDN EKDEEDDEFF GAAKVHPKRY KCGTCNRTFR SHQALGGHRA SHKLKSKKIS  180
QEEEDDDENG GDATDHKIHQ QRTYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158370.0JX615837.1 Gossypium hirsutum clone NBRI_GE60071 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446969.11e-152PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2LUY41e-150A0A0D2LUY4_GOSRA; Uncharacterized protein
STRINGGorai.001G049200.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-13C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]