PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G051100.1
Common NameB456_001G051100, LOC105785381
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 199aa    MW: 22639.5 Da    PI: 6.3667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G051100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-1770120255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + k  r++lg+++   +Aaka++ a+ k++g
  Gorai.001G051100.1  70 HYRGVRRRP-WGKFAAEIRDP---NrKGIRVWLGTYDNDVDAAKAYDCAAFKMRG 120
                         7********.**********9...6566**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-3069129IPR001471AP2/ERF domain
CDDcd000186.22E-2670128No hitNo description
SMARTSM003802.3E-3470134IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2170130IPR016177DNA-binding domain
PfamPF008474.1E-1270120IPR001471AP2/ERF domain
PROSITE profilePS5103223.51270128IPR001471AP2/ERF domain
PRINTSPR003673.6E-137182IPR001471AP2/ERF domain
PRINTSPR003673.6E-13110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MPATFEESTT LEFIRQHLLG DFATVDAFIN TLDFFLSHLQ PQSHQLPEIF THGVEPAPIT  60
KESFCEEKRH YRGVRRRPWG KFAAEIRDPN RKGIRVWLGT YDNDVDAAKA YDCAAFKMRG  120
QKAILNFPLE AGEGSQPPAV TTGRKRRREK RVWLPESDVT SPGSSEMAWE VKEEEGELDD  180
DDRNGLSLLT RKRVMVTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2769134469ATERF1
3gcc_A5e-2769134469ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147RKRRR
2143149RKRRREK
3143150RKRRREKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1812510.0AY181251.1 Gossypium hirsutum ethylene-responsive element binding factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466914.11e-147PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY053e-43EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A0D2PSI61e-146A0A0D2PSI6_GOSRA; Uncharacterized protein
STRINGGorai.001G051100.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-44ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]