PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G061800.1
Common NameB456_001G061800, LOC105786580
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 444aa    MW: 49666.1 Da    PI: 5.4639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G061800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-10107129426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C ++++tG Ck+G +CkF+H+
  Gorai.001G061800.1 107 EDCAYYMKTGLCKFGFNCKFNHP 129
                         89********************9 PP
2zf-CCCH30.56.2e-10150173427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          +C++++rtG Ck+G  C+++H++
  Gorai.001G061800.1 150 QECKYYLRTGGCKFGKACRYNHSK 173
                         58********************95 PP
3zf-CCCH39.21.1e-12194218226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++r+G CkyG++C+F+H+
  Gorai.001G061800.1 194 GEKECPYYMRNGSCKYGANCRFNHP 218
                         6789********************9 PP
4zf-CCCH26.98.2e-09330356127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+ ++Ck++H++
  Gorai.001G061800.1 330 PGQPECSYFLKTGDCKFKSNCKYHHPK 356
                         5789*********************96 PP
5zf-CCCH375.6e-12377401226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++r+G+Ck+G+ CkF H+
  Gorai.001G061800.1 377 DQSICSYYSRYGICKFGPACKFDHS 401
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-6101131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235103131IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4103130IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-8107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4109128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925146174IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6148174IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7150173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4152173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201192220IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6192219IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10194218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-6195221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5198217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333329357IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4329356IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6331356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5334358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6373401IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53375403IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4375402IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9377401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5379402IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK  60
EEDEEKDEVE TQNDVEEEED IIENENDDDV KKDEERRTIY PVRPEAEDCA YYMKTGLCKF  120
GFNCKFNHPV RRKNQAVKEK DESTEKTNQQ ECKYYLRTGG CKFGKACRYN HSKQNSSVSP  180
ILELNFLGLP IRKGEKECPY YMRNGSCKYG ANCRFNHPDP KLAGACEPPS GYGNGGSVSL  240
QAASQVNMVS WSAPMTLNDS AAYLPIMFSP TQGVPPPNPE WNGYQTTLYP PLERGLHPTP  300
AYVMSNPSTE TTAYTHHQLQ MVVDDFPERP GQPECSYFLK TGDCKFKSNC KYHHPKNRVP  360
KPTPCALSDK GLPLRPDQSI CSYYSRYGIC KFGPACKFDH SIQATPPTVS GLDQPRPFSH  420
STATEQAGIA RSNRADTAVQ QSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.27670.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468545.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ9STM41e-137C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0D2QLD40.0A0A0D2QLD4_GOSRA; Uncharacterized protein
STRINGGorai.001G061800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-134C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]