PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G064900.1
Common NameB456_001G064900, LOC105770431
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 217aa    MW: 24499.4 Da    PI: 9.1276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G064900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.6e-164392255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y GVr+++ +grWvAeI+  s   ++ r +lg+f+ +eeAa a+++a+  l+g
  Gorai.001G064900.1 43 RYLGVRQRP-SGRWVAEIKNSS---QKLRLWLGTFDKPEEAALAYDNAAMVLRG 92
                        689******.7******98832...46**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-2743100IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1943101IPR016177DNA-binding domain
SMARTSM003802.5E-3143106IPR001471AP2/ERF domain
CDDcd000181.89E-2943101No hitNo description
PROSITE profilePS5103219.78343100IPR001471AP2/ERF domain
PfamPF008479.8E-124392IPR001471AP2/ERF domain
PRINTSPR003675.2E-74455IPR001471AP2/ERF domain
PRINTSPR003675.2E-76682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVPQQDQSPN KNQTSIEPHE AQTMAENSEK RSIKKVINNG RRRYLGVRQR PSGRWVAEIK  60
NSSQKLRLWL GTFDKPEEAA LAYDNAAMVL RGKNAKTNFQ YEGNLNLIGK VNINPRVYQL  120
LQLTIMKNHA RSALRSINGK RMDPVDIDGF DTIVEETIFC DDHHHHHDHD EGDNNNNNNK  180
LCKVSLGNSK VYSSVVVAPS FCSSSIDQQG QKENNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14431061478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6168570.0JX616857.1 Gossypium hirsutum clone NBRI_GE61800 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447088.11e-163PREDICTED: ethylene-responsive transcription factor ERF095-like
TrEMBLA0A0D2PV601e-161A0A0D2PV60_GOSRA; Uncharacterized protein
STRINGGorai.001G064900.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-24related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]