PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G073600.3

Common Name

B456_001G073600, LOC105787797

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 26694.2 Da PI: 4.4288

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G073600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.1e-20	37	90	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++++LAk+lgL+ rqV +WFqNrRa++k Gorai.001G073600.3 37 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 90 56689************************************************9 PP
2	HD-ZIP_I/II	127.6	5.3e-41	36	127	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ +L ke+++L++e+ Gorai.001G073600.3 36 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEV 126 69**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 Gorai.001G073600.3 127 L 127 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-20	25	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.702	32	92	IPR001356	Homeobox domain
SMART	SM00389	1.1E-19	35	96	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-17	37	90	IPR001356	Homeobox domain
CDD	cd00086	1.04E-17	37	93	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-20	39	99	IPR009057	Homeodomain-like
PRINTS	PR00031	2.4E-6	63	72	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	67	90	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.4E-6	72	88	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.9E-14	92	133	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVSFEDVHGG NRSFFRSFDE EENGDEDLDE YFHQPEKKRR LTVDQVQFLE KSFEVENKLE 60 PERKTQLAKE LGLQPRQVAI WFQNRRARWK TKQLEKDYDT LQASFNTLKD DYGNLLKEKD 120 KLKQEVLQLT DKLVMKEKNN SELSDVNTVC QEPPQKPVDS DSPHSSYPFE PDQSDTSQDE 180 EDNLSKALFQ PSSYIFPKLE DNDYSDPPAS SCSYGFHVED HAFWSSAY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	92	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1909	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469806.1	1e-167	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
Refseq	XP_012469815.1	1e-167	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
Refseq	XP_016744331.1	1e-167	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
Refseq	XP_016744332.1	1e-167	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBL	A0A0D2LVS4	1e-166	A0A0D2LVS4_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2PMW7	1e-166	A0A0D2PMW7_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2QLT7	1e-166	A0A0D2QLT7_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NZD9	1e-166	A0A1U8NZD9_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBL	A0A1U8NZF7	1e-166	A0A1U8NZF7_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBL	A0A2P5S3Z0	1e-166	A0A2P5S3Z0_GOSBA; Uncharacterized protein
STRING	Gorai.001G073600.1	1e-161	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	7e-46	homeobox 1

Link Out ? help Back to Top
Phytozome	Gorai.001G073600.3
Entrez Gene	105787797

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]