PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G074200.2
Common NameB456_001G074200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 353aa    MW: 40055.1 Da    PI: 5.5067
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G074200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.42.1e-0918402345
                        HHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF 23 KAeELSvLCdaevaviifsstgk 45
                        KA+ELS+LCd+ + +++fs+tgk
  Gorai.001G074200.2 18 KAKELSILCDIHIILLMFSPTGK 40
                        9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003192.0E-71843IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.4611848IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-111881IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDDVIDLTMD TVLSHRPKAK ELSILCDIHI ILLMFSPTGK PTLFHGERSN IEEVIVKFAQ  60
LTPQERAKRK LESLEALKKT FMKLDHDLNI HDFLGANSQS IEEMTKEVSR FRAQLAEVHK  120
RLSYWSNPDK IDNIEHLRQM EDSLRESIER VRIHKENFGK HHLMSLECCN QFQNRIPLSV  180
MIGAVQEAQP VMWLPNNENH HTLLHNELNF LPHRDAECST DCSLAGYSGF FGSGKQTEIS  240
SSGQVDNVVQ ECNALNELGS NACLNLEPGE QYFYQPYSAS NYQDDEKLKT EMEVNLQGNP  300
VVNQVISNFE IPRPMYNNGH QAWVLSSGPC GIAMFDGNSY HQTPSSGQCH DL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364490.0HM236449.1 UNVERIFIED: Gossypium hirsutum MADS33-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469941.10.0PREDICTED: MADS-box transcription factor 57-like isoform X4
SwissprotQ7X9I03e-85AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A0D2PVI40.0A0A0D2PVI4_GOSRA; Uncharacterized protein
STRINGGorai.001G074200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.15e-79AGAMOUS-like 65
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]