PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G087200.1
Common NameB456_001G087200, LOC105770544
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 248aa    MW: 28678.2 Da    PI: 6.5103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G087200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ll+++++++G g W+ ++++ g++R++k+c++rw++yl
  Gorai.001G087200.1 10 KGAWTEEEDLLLKKCIEKYGEGKWHQVPARAGLNRCRKSCRLRWLNYL 57
                        79********************************************97 PP
2Myb_DNA-binding45.61.7e-1463108148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg + ++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Gorai.001G087200.1  63 RGHFAADEVDLIIRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108
                         6778899***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.367561IPR017930Myb domain
SuperFamilySSF466895.5E-297104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-23759IPR009057Homeodomain-like
SMARTSM007174.2E-16959IPR001005SANT/Myb domain
PfamPF002494.5E-171057IPR001005SANT/Myb domain
CDDcd001678.47E-121257No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2260112IPR009057Homeodomain-like
PROSITE profilePS5129419.15462112IPR017930Myb domain
SMARTSM007172.9E-1362110IPR001005SANT/Myb domain
PfamPF002492.8E-1363108IPR001005SANT/Myb domain
CDDcd001671.38E-968108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEGSSLRVRK GAWTEEEDLL LKKCIEKYGE GKWHQVPARA GLNRCRKSCR LRWLNYLKPN  60
IKRGHFAADE VDLIIRLHNL LGNRWSLIAG RLPGRTANDV KNYWNTHLLK KIIDTSGKNS  120
KPKSYQPNPN TKIIKPRPHI LSKHSFLISL DEYNNNNNNN HAEASNNVAL ANDGNDDYGY  180
CFPNDHDEMM WWENMMINEK DVDGYQLQCS ANDFDQSVLD QPMNEDNYGS IIDEVFLDEE  240
LWNVFNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-22101124105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-22101124105C-Myb DNA-Binding Domain
1msf_C6e-22101124105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4918770.0KC491877.1 Gossypium arboreum transcription factor AN2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447247.10.0PREDICTED: transcription factor MYB75-like
SwissprotQ9FNV93e-61MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0D2PP180.0A0A0D2PP18_GOSRA; PAP1D
STRINGGorai.001G087200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-62myb domain protein 113
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]