PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G090000.4
Common NameB456_001G090000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 20874.9 Da    PI: 10.8964
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G090000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25e-291059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rien++ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+e+ss
  Gorai.001G090000.4 10 RIENNISRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLFEFSS 59
                        8***********************************************96 PP
2K-box86.93.9e-29801661197
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         ++ +++++ e++kL + ie Lqr++R++ Ge+Le+Lsl++Lq Leqq+ +slk+iR++Kn+l+ e+i+ lqk+ek lq++n++L kk
  Gorai.001G090000.4  80 SESQANWSLESSKLMSTIEVLQRSLRNFRGEELEPLSLRDLQLLEQQIGNSLKRIRTRKNKLMNESISVLQKREKTLQDQNNMLAKK 166
                         56789*******************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-31277IPR002100Transcription factor, MADS-box
CDDcd002655.08E-38271No hitNo description
PRINTSPR004043.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2580166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.80183175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRGRVQLRR IENNISRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFSN KGKLFEFSSD  60
PSMERILERY ERQIYAPTGS ESQANWSLES SKLMSTIEVL QRSLRNFRGE ELEPLSLRDL  120
QLLEQQIGNS LKRIRTRKNK LMNESISVLQ KREKTLQDQN NMLAKKRELR SHERDKQGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20170169MEF2C
5f28_B7e-20170169MEF2C
5f28_C7e-20170169MEF2C
5f28_D7e-20170169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556560.0KC155656.1 Gossypium hirsutum MADS box protein MADS61 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472157.11e-116PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotD7SMN63e-78FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A0D2N2Q51e-125A0A0D2N2Q5_GOSRA; Uncharacterized protein
STRINGGorai.001G090000.11e-116(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.13e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]