PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G090100.1
Common NameB456_001G090100, LOC105770595
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 210aa    MW: 23860.1 Da    PI: 9.7855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G090100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-191360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd+ll+++v+ +G g+W+++ar  g++R++k+c++rw +yl
  Gorai.001G090100.1 13 KGPWTHEEDKLLAEYVTFHGEGRWSSVARSTGLNRSGKSCRLRWVNYL 60
                        79********************************************97 PP
2Myb_DNA-binding49.78.3e-1666110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T++E+ + v++++++G++ W+tIa++++ gRt++++k++w+++
  Gorai.001G090100.1  66 RGHITPQEEGIMVELHALWGNK-WSTIAKYLP-GRTDNEIKNYWRTH 110
                         6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.261864IPR017930Myb domain
SuperFamilySSF466891.44E-3011107IPR009057Homeodomain-like
SMARTSM007173.3E-151262IPR001005SANT/Myb domain
PfamPF002491.5E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-231467IPR009057Homeodomain-like
CDDcd001674.31E-111560No hitNo description
PROSITE profilePS5129418.18565115IPR017930Myb domain
SMARTSM007176.1E-1265113IPR001005SANT/Myb domain
PfamPF002491.4E-1366110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2368114IPR009057Homeodomain-like
CDDcd001674.35E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMVRGAPKQA WRKGPWTHEE DKLLAEYVTF HGEGRWSSVA RSTGLNRSGK SCRLRWVNYL  60
RPGLKRGHIT PQEEGIMVEL HALWGNKWST IAKYLPGRTD NEIKNYWRTH FMKKERSAQR  120
QQKRKALKLK QQPPQPNKEE TAAVGDGGGA TDHEGRMCEE AATLLDEYLM NEGLWWNQQQ  180
QANNIAMQMQ QVACNCYGGG VISNGGCIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251311427127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5908283e-67JX590828.1 Gossypium hirsutum clone NBRI_GE25823 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447326.11e-156PREDICTED: transcription factor MYB59-like
SwissprotQ4JL842e-49MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A0D2PRK31e-155A0A0D2PRK3_GOSRA; Uncharacterized protein
STRINGGorai.001G090100.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-62myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]