PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G100000.1
Common NameB456_001G100000, LOC105790315
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 531aa    MW: 59067.4 Da    PI: 5.5944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G100000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.9e-08467521146
                         TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                         r+ WT+eE++ l+++v+++ +       W++I ++       +R + ++k++w +
  Gorai.001G100000.1 467 RLHWTAEEEDMLKELVHKFSSQvnkniPWRKILEHGRpvfhSTRIPVDLKDKWKN 521
                         789********************************99****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.13E-6120175IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.0E-6122174IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.4E-4124170IPR001965Zinc finger, PHD-type
PROSITE patternPS013590125169IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5129410.706462527IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-10463530IPR009057Homeodomain-like
SuperFamilySSF466893.12E-8465524IPR009057Homeodomain-like
SMARTSM007171.6E-5466525IPR001005SANT/Myb domain
PfamPF002492.1E-6468522IPR001005SANT/Myb domain
CDDcd116605.56E-8470523No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MKMGRKVGVV KSGVRNSIPS SNPSTVSLPL RCQHEGDEDR HVDGKNHGAY EDTGSGQDKD  60
NNSSGDANAD ADGMGNCNVN GDALVNVDDK VNDRDEEKGD DDVARCVRGK HADCIVVDWL  120
NGEYCFECNS GSGQVLVCSE NGCPVALHEA CMTWRPIFDD MGKFYCPYCL YKKEVARFKD  180
LTTEAMLARK ELSNFICLRR DSRNKEREGE TVSMKGASVS TMAREVGCGD CRNGLNDDGK  240
ETRHRSQDET RGVDVIRKEQ SNEQNISRAH GFENVGNGEM MEEVEEDSSD SGGDDIGEGR  300
QQKQPSSSSG VGTVEETQGV DVIRKEQSNE QNISRGHGFE NVGNREMMEE DIEISSDSGN  360
AEIGDDRREL RPSSSKVPVI ESFEFVSRNL DAETLVTHQK RDKQRANKAQ PLKVVSPEKS  420
SLQPSTSAKN MNVNQERKTV AVKISEERAK STKRSLLPVL GTEKRRRLHW TAEEEDMLKE  480
LVHKFSSQVN KNIPWRKILE HGRPVFHSTR IPVDLKDKWK NIVAKEISKG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463467KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473339.10.0PREDICTED: uncharacterized protein LOC105790315 isoform X2
TrEMBLA0A0D2PPG20.0A0A0D2PPG2_GOSRA; Uncharacterized protein
STRINGGorai.001G100000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1539557
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]