PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G105100.1
Common NameB456_001G105100, LOC105790785
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 228aa    MW: 25822.2 Da    PI: 10.4456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G105100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99e-12107148351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Gorai.001G105100.1 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 148
                         79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-6106149IPR001471AP2/ERF domain
SMARTSM003801.8E-4106163IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-8107151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-6109157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGKSSFL SPLSRFFCNG NPPESSSQNA KSISVHPMPS DSVNHIHGKS  60
IVKVESGSPN VSGSSKEPHY QPFSGQTIKR RKRHRRKHVQ NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGSQEEAA RLYDRAAFMC GREPNFELPE EEKRELSRFK WDEFLAYTRR  180
SITNKKYKQR LGVEPQKRSE PVIENSDQDS KRGADSSSAS EEVGPDT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473993.11e-169PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012473999.11e-169PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012474006.11e-169PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP99e-48ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0D2PX471e-168A0A0D2PX47_GOSRA; Uncharacterized protein
STRINGGorai.001G105100.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-50ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]