PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G108900.1

Common Name

B456_001G108900, LOC105791188

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 279aa MW: 31241.3 Da PI: 8.2973

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G108900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.8e-20	50	109	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ +Le+l+ + r+psa+++++++++l +++ ++V++WFqN++a++++ Gorai.001G108900.1 50 SRWNPTKEQISILESLYLQgLRTPSADQIQQITSRLkaygSIEGKNVFYWFQNHKARQRQ 109 6***************99************************************96 PP
2	Wus_type_Homeobox	115	3.7e-37	49	111	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQi iLe+ly +GlrtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq Gorai.001G108900.1 49 DSRWNPTKEQISILESLYLQGLRTPSADQIQQITSRLKAYGSIEGKNVFYWFQNHKARQRQKQ 111 68***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.835	45	110	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-13	47	116	IPR009057	Homeodomain-like
SMART	SM00389	4.5E-6	47	114	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-18	50	109	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-8	50	109	IPR009057	Homeodomain-like
CDD	cd00086	2.54E-5	51	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MFSLFCFPLY IVKSRRTYKI SETSNKPKKI KTMEGGNMDT SGDGGTTGDS RWNPTKEQIS 60 ILESLYLQGL RTPSADQIQQ ITSRLKAYGS IEGKNVFYWF QNHKARQRQK QKQQNLAYIN 120 RYLYWTTQPV YPPPPPHGIN VACGPHFLPQ VELGIYPQTQ CPKVLLPGGD ERRERPAKMG 180 KPLQRDYNTM LPHAENFEGL LNISNHETLE LFPLHPTGLL ETKETLMSPL GSTNSAGISI 240 ITPSISCETT AGIDEEGSST GEQQFFDFFT SQGSSARD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586701	1e-45	JX586701.1 Gossypium hirsutum clone NBRI_GE20590 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474598.1	0.0	PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBL	A0A0D2PRN6	0.0	A0A0D2PRN6_GOSRA; Uncharacterized protein
STRING	Gorai.001G108900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6914	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	2e-37	WUSCHEL related homeobox 2

Link Out ? help Back to Top
Phytozome	Gorai.001G108900.1
Entrez Gene	105791188

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]