PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G112700.1

Common Name

B456_001G112700, LOC105761873

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 182aa MW: 20070 Da PI: 6.8867

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G112700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ Fs+ L H++ H Gorai.001G112700.1 27 YDCTFCKRGFSNAQALGGHMNIH 49 88*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.41E-6	25	54	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-4	25	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.344	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051973	Biological Process	positive regulation of telomerase activity
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
METDQPAPEN PDKASSDEQG ASPARSYDCT FCKRGFSNAQ ALGGHMNIHR RDKAKLKQPS 60 PTHETTATTQ QSNFDISKII PSYSHTPSSH GKWRWVLQDD GADARTDKTS DHIVGSQIRQ 120 LPLFDEKPSK SDQNPRSQVQ EGLEKGFSST QPPLGSELDL ELRLGPEPHD SSPPKTTKKF 180 F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435280.1	1e-132	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A0D2LXE8	1e-131	A0A0D2LXE8_GOSRA; Uncharacterized protein
STRING	Gorai.001G112700.1	1e-132	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6991	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	6e-19	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G112700.1
Entrez Gene	105761873

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]