PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G117300.1

Common Name

B456_001G117300, LOC105792056

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 205aa MW: 23445.2 Da PI: 10.9221

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G117300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	54.4	3.7e-17	14	103	4	98
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +r++se+Dei +L+ li +++ + + ++ + k+++ +++ sq+++KirrL++K +++ ++ ++++hd+ if+lsk+ Gorai.001G117300.1 14 SRVFSESDEIQILKCLIRATKSIPPPITTVGTSTINRIIKRLDHRFTVSQITDKIRRLRDKHHNHARN-----RALVRNHHDRRIFKLSKR 99 69*************997777755555667788999999*******************9999.....778999******** PP DUF573 95 iWgs 98 iWg+ Gorai.001G117300.1 100 IWGK 103 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.7E-17	14	102	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSTTPPSTAP NGRSRVFSES DEIQILKCLI RATKSIPPPI TTVGTSTINR IIKRLDHRFT 60 VSQITDKIRR LRDKHHNHAR NRALVRNHHD RRIFKLSKRI WGKKATPRKK NSKSEDQGAI 120 EMGGDGVEKL DKFPYLVAEF SKVLPENEVW KQKMKRVEEE KLRKMDQEWV MLKVEEAKLV 180 AKKAELIQQQ IMEVMGGNGS ANGV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475884.1	1e-150	PREDICTED: uncharacterized protein LOC105792056
Refseq	XP_016745153.1	1e-150	PREDICTED: uncharacterized protein LOC107954177
TrEMBL	A0A0D2QP62	1e-148	A0A0D2QP62_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8P483	1e-148	A0A1U8P483_GOSHI; uncharacterized protein LOC107954177
STRING	Gorai.001G117300.1	1e-149	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17149	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	4e-11	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.001G117300.1
Entrez Gene	105792056

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]