PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G119200.1
Common NameB456_001G119200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 190aa    MW: 22661.1 Da    PI: 9.2963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G119200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-067393425
                        ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                        + Cr + +  tC++G+ C+F+H
  Gorai.001G119200.1 73 ATCRQYDE-NTCNRGGYCNFMH 93
                        57******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.4696996IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-47394IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAEHLASIFG TKKDRVNCPF YFKISTCRQS YYPPLQYELS KYVEIESLNL WDNLADYMRI  60
IVDFSPVTGF CEATCRQYDE NTCNRGGYCN FMHLYRISRS RRRRSHSRSK SRSSHRFRTS  120
CEEHSYGGHG HSKRYDDRDN YHEGRRKRNK EKRAKIEQSN WEREQQENAK IIDKDVANDN  180
NENRNNGYV*
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671977.11e-54PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_016671978.11e-54PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_016671980.11e-54PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_016671981.11e-54PREDICTED: splicing factor U2af small subunit B-like
SwissprotQ9ZQW82e-33U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLA0A0D2PXP61e-139A0A0D2PXP6_GOSRA; Uncharacterized protein
STRINGGorai.001G119200.11e-140(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.14e-12C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]