PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G131300.1

Common Name

B456_001G131300, LOC105793589

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 244aa MW: 27852.6 Da PI: 10.2978

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G131300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41.1	3.9e-13	137	226	11	100
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 e++++ k ++P+ rik+i+k+++ +s ++ l+ ka elf+ ++ + + + ++++l ++++v + + +dfl d vp+++ Gorai.001G131300.1 137 EEEEEAKVCRFPMNRIKRIIKTEDSHMAVSQDVVFLVNKAAELFLEKFCEDGYKCSIKDRKKSLSYKHLSTVVHEQKRYDFLSDYVPQKK 226 6677889999*************9***********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.11E-16	143	224	IPR009072	Histone-fold
Pfam	PF00808	5.1E-14	146	209	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.2E-22	147	224	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MALDIRSMEF GVEIFRNLRE RERESAMASS SKKPKEENKK KKNKEKSNRT ADKDTKKSIK 60 KPEKKASASK TPTKSKPNPE SKPDKSKNKS SNGIPVKSQV IADPSSSSES EPQENRNNSH 120 KNVKPNSKRK RKEEVDEEEE EAKVCRFPMN RIKRIIKTED SHMAVSQDVV FLVNKAAELF 180 LEKFCEDGYK CSIKDRKKSL SYKHLSTVVH EQKRYDFLSD YVPQKKKAED ALKVMNLAET 240 GEG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477933.1	1e-174	PREDICTED: DNA polymerase epsilon subunit C
TrEMBL	A0A0D2QPX4	1e-173	A0A0D2QPX4_GOSRA; Uncharacterized protein
STRING	Gorai.001G131300.1	1e-174	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-31	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Gorai.001G131300.1
Entrez Gene	105793589

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]