PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G150000.1

Common Name

B456_001G150000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 502aa MW: 57482.4 Da PI: 5.7812

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G150000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.7	1.1e-40	6	130	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 GfrF P dee+++++Lkkk+ g++ ++ + i+evd++k+ePw+Lp + v+++ ew+fF k +k ++ +++ r+t++gyWk+tg d+ Gorai.001G150000.1 6 EIGFRFLPPDEEIISFFLKKKMMGDHKTT-RYIREVDLLKHEPWQLPaMsVVQSTYPEWFFFYKLSKISQ--RKNDRSTNDGYWKSTGADR 93 68*********************9777.89***********5334555555***999765..58889********** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++l+g+kktLvfykgr+p+g +tdWvmhe+r+ Gorai.001G150000.1 94 PITC-GDSLIGTKKTLVFYKGRTPNGLRTDWVMHEFRA 130 .999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-42	4	137	IPR003441	NAC domain
PROSITE profile	PS51005	43.687	5	166	IPR003441	NAC domain
Pfam	PF02365	2.7E-20	7	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MDNVLEIGFR FLPPDEEIIS FFLKKKMMGD HKTTRYIREV DLLKHEPWQL PAMSVVQSTY 60 PEWFFFYKLS KISQRKNDRS TNDGYWKSTG ADRPITCGDS LIGTKKTLVF YKGRTPNGLR 120 TDWVMHEFRA TADSLPPNAD NSYVVGYLRG NAAEKNEYLI SNVYQQCTRF AASSSQDNAV 180 GATSMESNSA DFDIALRMYM EEEGMFDSDL SPSGGLHCFP SSSAIFNNDQ SRIEEERFSL 240 EDFDYLQSDD LFDDENEWQR QFVNTIDDEM EFYGALFHNP DERTNAEAEY RDNAWVKKHY 300 RVVTHDQIVH MSDGTCHGHS EGLNQRRMET GVHHDEVLIM DSGVESATVT AYEINCLELV 360 QEERSVNSRA CKSEYKPISH KSAVLRHPRR VQLQDKSLGK AVSRDKTRES GIRGPAVQPI 420 QDKKSILQAN EGPKMDRDRN TKLIVNWRSE GSSGSSRKNS FNFVEMSQLS CKADPALVYF 480 RNLVLGLILF VVLVREVMFL R*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MDNVLEIGFR FLPPDEEIIS FFLKKKMMGD HKTTRYIREV DLLKHEPWQL PAMSVVQSTY  60
PEWFFFYKLS KISQRKNDRS TNDGYWKSTG ADRPITCGDS LIGTKKTLVF YKGRTPNGLR  120
TDWVMHEFRA TADSLPPNAD NSYVVGYLRG NAAEKNEYLI SNVYQQCTRF AASSSQDNAV  180
GATSMESNSA DFDIALRMYM EEEGMFDSDL SPSGGLHCFP SSSAIFNNDQ SRIEEERFSL  240
EDFDYLQSDD LFDDENEWQR QFVNTIDDEM EFYGALFHNP DERTNAEAEY RDNAWVKKHY  300
RVVTHDQIVH MSDGTCHGHS EGLNQRRMET GVHHDEVLIM DSGVESATVT AYEINCLELV  360
QEERSVNSRA CKSEYKPISH KSAVLRHPRR VQLQDKSLGK AVSRDKTRES GIRGPAVQPI  420
QDKKSILQAN EGPKMDRDRN TKLIVNWRSE GSSGSSRKNS FNFVEMSQLS CKADPALVYF  480
RNLVLGLILF VVLVREVMFL R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-28	5	129	15	139	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847250	0.0	KC847250.1 Gossypium hirsutum NAC domain protein NAC73 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480538.1	0.0	PREDICTED: protein NTM1-like 9
TrEMBL	A0A0D2PRV0	0.0	A0A0D2PRV0_GOSRA; Uncharacterized protein
STRING	Gorai.001G150000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22195	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	3e-41	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Gorai.001G150000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]