PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G151700.1

Common Name

B456_001G151700, LOC105771003

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 503aa MW: 56111.2 Da PI: 5.0175

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G151700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	322	367	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Gorai.001G151700.1 322 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 367 799*********************6.....4*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.5E-54	26	208	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.015	318	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-17	319	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.33E-14	321	372	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-16	322	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-10	322	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-16	324	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MEELIISPSS SSSLVYMTQE TSPSTLQQRL QFVVQSQQIW WTYAIFWQTS NDEHGRLYLC 60 WGDGYFQGTT KGTPPKLLSA NNSCLENERR KEMKGAQTLI RDNHEVDVSM MDGTTGVSDA 120 VWFYVMSLTR SFPAGEGIPG MALSTGSLVW LTGAHALQFY NCERAIEAQM HGIETMVCIP 180 TSCGVLELGS VEMISENWGL VQQVKSLFGA DPIDLVQKQS STDPTLTPPS IPFLDRNISF 240 ADIGIISGVE EEEEDVGPDN ETKQEHHNHP TKKYFTKLGQ SSSVDSEHSD SDRPSLAMSH 300 LEQKTPQKRG RKPGLGRETP LNHVEAERQR REKLNHRFYA LRAVVPNVSR MDKASLLSDA 360 VSYINELKAK IEELESQLQR ECKKPKVEMV DVTDNHSTTT SVEQEAAKPD NSPSPATAGC 420 VGLEFDIKIM GNDAMIRVQS ENANYPVTRL MVALRDLEFP IHHASMSCVN ETMLQDIVVN 480 VPDLELRNEQ GLKSALLRRL DH*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MEELIISPSS SSSLVYMTQE TSPSTLQQRL QFVVQSQQIW WTYAIFWQTS NDEHGRLYLC  60
WGDGYFQGTT KGTPPKLLSA NNSCLENERR KEMKGAQTLI RDNHEVDVSM MDGTTGVSDA  120
VWFYVMSLTR SFPAGEGIPG MALSTGSLVW LTGAHALQFY NCERAIEAQM HGIETMVCIP  180
TSCGVLELGS VEMISENWGL VQQVKSLFGA DPIDLVQKQS STDPTLTPPS IPFLDRNISF  240
ADIGIISGVE EEEEDVGPDN ETKQEHHNHP TKKYFTKLGQ SSSVDSEHSD SDRPSLAMSH  300
LEQKTPQKRG RKPGLGRETP LNHVEAERQR REKLNHRFYA LRAVVPNVSR MDKASLLSDA  360
VSYINELKAK IEELESQLQR ECKKPKVEMV DVTDNHSTTT SVEQEAAKPD NSPSPATAGC  420
VGLEFDIKIM GNDAMIRVQS ENANYPVTRL MVALRDLEFP IHHASMSCVN ETMLQDIVVN  480
VPDLELRNEQ GLKSALLRRL DH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	1e-33	25	208	8	192	Transcription factor MYC3
4rqw_B	1e-33	25	208	8	192	Transcription factor MYC3
4rs9_A	1e-33	25	208	8	192	Transcription factor MYC3
4yz6_A	1e-33	25	208	8	192	Transcription factor MYC3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615801	0.0	JX615801.1 Gossypium hirsutum clone NBRI_GE60007 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447848.1	0.0	PREDICTED: transcription factor MYC2-like
TrEMBL	A0A0D2QQW6	0.0	A0A0D2QQW6_GOSRA; Uncharacterized protein
STRING	Gorai.001G151700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3039	21	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	3e-64	NACL-inducible gene 1

Link Out ? help Back to Top
Phytozome	Gorai.001G151700.1
Entrez Gene	105771003

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]