PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G152200.1
Common NameB456_001G152200, LOC105795702
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 236aa    MW: 26767.7 Da    PI: 4.5387
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G152200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-182881356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++++f++eq++ Le +Fe++  +   ++ e Ak+lgL  rqV +WFqN+Ra++k
  Gorai.001G152200.1 28 NKRRFSDEQIKSLELVFESETRLEPGKKLEVAKELGLHPRQVAIWFQNKRARWK 81
                        5679*************************************************9 PP
2HD-ZIP_I/II115.33.6e-3728119293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +krr+s+eq+k+LE  Fe+e++Lep +K e+a+eLgl+prqva+WFqn+RAR+k+kqlE+dy+ L+++y+ l+++ e+L+ke++ L  +l+
  Gorai.001G152200.1  28 NKRRFSDEQIKSLELVFESETRLEPGKKLEVAKELGLHPRQVAIWFQNKRARWKSKQLEQDYSILQANYNILASKLESLKKEKQGLVIQLQ 118
                         79************************************************************************************99988 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Gorai.001G152200.1 119 K 119
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.63E-171385IPR009057Homeodomain-like
PROSITE profilePS5007116.7142383IPR001356Homeobox domain
SMARTSM003891.6E-152587IPR001356Homeobox domain
PfamPF000463.1E-152881IPR001356Homeobox domain
CDDcd000861.42E-132984No hitNo description
Gene3DG3DSA:1.10.10.601.9E-182990IPR009057Homeodomain-like
PRINTSPR000311.8E-55463IPR000047Helix-turn-helix motif
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
PRINTSPR000311.8E-56379IPR000047Helix-turn-helix motif
PfamPF021832.5E-1283124IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMFDGGDNYT QEMMSVTGIS TTKTKNNNKR RFSDEQIKSL ELVFESETRL EPGKKLEVAK  60
ELGLHPRQVA IWFQNKRARW KSKQLEQDYS ILQANYNILA SKLESLKKEK QGLVIQLQKL  120
NHLLKKPEEE GQCCEQVTSM NSIDGESDQG EGVKSDSEGQ LSLSMERSEH ALGGFSDDDS  180
GTKIDCFGLE EKLNFISMAE PADGSLTSSE EWQSFDSDAL FDRYSSGYEW WDFRS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480827.11e-174PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468976e-64ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0D2M4261e-172A0A0D2M426_GOSRA; Uncharacterized protein
STRINGGorai.001G152200.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-59homeobox 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]