PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G155800.1

Common Name

B456_001G155800, LOC105796094

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 336aa MW: 38186 Da PI: 5.95

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G155800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.1	8.6e-29	112	173	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ gs+fpr+YYrCt++ gC + k+v+rs+edp+++e++Y+g+H ++ Gorai.001G155800.1 112 LDDGYCWRKYGQKDILGSNFPRAYYRCTHRysqGCLAGKQVQRSDEDPTIFEVKYRGRHACN 173 59*************************99999***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-27	102	174	IPR003657	WRKY domain
PROSITE profile	PS50811	23.101	107	170	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-25	110	174	IPR003657	WRKY domain
SMART	SM00774	2.9E-38	112	174	IPR003657	WRKY domain
Pfam	PF03106	5.4E-24	113	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MEKTMGWEQN TLLNELAQGR DFTNMLRKHL HPSSSPETRQ VLLDKILCSY DKALSLLNCS 60 GFMVETKPRV RTLGSPESDA SDKKDMLKKR KTSSGWSEQI RVCSAMSLEG PLDDGYCWRK 120 YGQKDILGSN FPRAYYRCTH RYSQGCLAGK QVQRSDEDPT IFEVKYRGRH ACNQVPHLVA 180 KPKEKGNHYR EKQQVEEKQK QSKEMLLSFE TGLKVKTEDL DNREDIFPSF SFPIESEEVQ 240 NGLLLNSLMK NMSPAFVSPA TSESNYFSVS AFHMGSFDFG QNVQTSESEL TEIISAPASV 300 TNSPIVDLDI SSLEKLEFDQ SFPYDNPEFF TNFLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-20	112	172	8	68	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669781	0.0	KF669781.1 Gossypium hirsutum WRKY transcription factor 5 (WRKY5) mRNA, complete cds.
GenBank	KM438467	0.0	KM438467.1 Gossypium aridum WRKY56 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481180.1	0.0	PREDICTED: probable WRKY transcription factor 46
TrEMBL	A0A0D2PZF7	0.0	A0A0D2PZF7_GOSRA; Uncharacterized protein
STRING	Gorai.001G155800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1933	27	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	8e-55	WRKY DNA-binding protein 46

Link Out ? help Back to Top
Phytozome	Gorai.001G155800.1
Entrez Gene	105796094

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]