PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G175500.1
Common NameB456_001G175500, LOC105771104
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 474aa    MW: 52544.8 Da    PI: 7.6709
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G175500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.001883100219
                         EETTTTEEESSHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                         +C++Cgk F ++ ++  H
  Gorai.001G175500.1  83 VCENCGKEFFSWKSFLEH 100
                         6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6631335IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-51335No hitNo description
SMARTSM003552.11335IPR015880Zinc finger, C2H2-like
PfamPF139120.00191435IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-577101No hitNo description
SMARTSM0035528082102IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-9215239IPR007087Zinc finger, C2H2
SMARTSM003550.13215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076215242IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-5292318No hitNo description
PfamPF139122.5E-13294318IPR007087Zinc finger, C2H2
SMARTSM003550.44295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369295317IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAFIVDQQSN FKHFCRICNK GFGCGRALGG HMRAHGIGDE SGHIDGDDPA SDWEDKLGRN  60
VPPSNKRMYA LRTNPNRLKS CRVCENCGKE FFSWKSFLEH GKCSSEDAES LVSSPGSDGD  120
DGEARRGCGW SKRKRSFRAN VGNFNTMFPS SEEEDLANCL MMLSNATVYP FVTEPEESCA  180
SASKEEERRN TMNFIAPIAC RVPMDKAKGV AKGLFECKAC KKVFNSHQAL GGHRASHKKV  240
KGCFAARVDN NQADEDHDVI THEEFFPTKS MSTLQFHQGT STPLASPSKK KSKVHECSIC  300
HRVFSSGQAL GGHKRCHWIT SNAPDTSSLA KFHRFQDQME LNQERPKFID NSEPLNLKLD  360
LNLPAAGGHH DALRRKHVNP SSFKVSTGIY LQPWLGGDDA KEKEHNQHRM QQLDHDNHDN  420
NKCNSLMQNA DEEADSMVKL AKLSELRDIN MSGGSSPWLQ VGIGSATNVG FDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447962.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2LZW30.0A0A0D2LZW3_GOSRA; Uncharacterized protein
STRINGGorai.001G175500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-31C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]