PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G192800.1
Common NameB456_001G192800, LOC105799806
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 532aa    MW: 59533.5 Da    PI: 6.4075
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G192800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.88.3e-1411615311374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+++L++cA+avs++dl  aq+l+ +l+ ++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P++
  Gorai.001G192800.1 161 LKQVLVSCAKAVSDNDLLTAQWLMDELRRMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHILYEVCPYF 248
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +++rL+k+A+ ++vpfefn+
  Gorai.001G192800.1 249 KFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVAKRLSKLAALFKVPFEFNA 339
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a +  +++ e+L+v+pgEalaVn++++lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F+ rf e+l+yy+a+f+s+
  Gorai.001G192800.1 340 -AAMSGCEVQQEHLQVRPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFFPRFRETLNYYTAMFESI 429
                         .899999************************************************************************************ PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpre++eri+vE+++l+r++vn++aceg er+erhe ++kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g l+lgW
  Gorai.001G192800.1 430 DVTLPREHKERINVEQHCLARDVVNIIACEGPERVERHELMGKWRSRFRMAGFTPYPLSSLVNATIKTLLENYCDR-YRLEERDGGLFLGW 519
                         **************************************************************************66.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+ +aW+
  Gorai.001G192800.1 520 MNRDLVASCAWK 531
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.916135512IPR005202Transcription factor GRAS
PfamPF035142.9E-138161531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MQASQQHRSS VMASRLFPQV KEEVEPCSFP QFPAIDRSFC YSDSSHGSHF SVKNSHEPYC  60
TLESSSARGS YTVYNSSSNG SPMSQQESQS NMSDLHHSPD NTYSSPISGS CITDDVSDLK  120
GKLRELETVM LGPDCDIINS TISPEMDSWR LVTDAVSRRD LKQVLVSCAK AVSDNDLLTA  180
QWLMDELRRM VSVSGEPIQR LGAYMLEGLV ARLASSGSSI YKALRCKEPA SAELLSYMHI  240
LYEVCPYFKF GYMSANGAIA EAMKDEDRVH IIDFQIGQGS QWITLIQAFA ARPGGPPHIR  300
ITGIDDSTSA YARGGGLNIV AKRLSKLAAL FKVPFEFNAA AMSGCEVQQE HLQVRPGEAL  360
AVNFAFMLHH MPDESVSTEN HRDRLLRLVK SLSPKVVTLV EQESNTNTAP FFPRFRETLN  420
YYTAMFESID VTLPREHKER INVEQHCLAR DVVNIIACEG PERVERHELM GKWRSRFRMA  480
GFTPYPLSSL VNATIKTLLE NYCDRYRLEE RDGGLFLGWM NRDLVASCAW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6216853026378Protein SCARECROW
5b3h_A1e-6216853025377Protein SCARECROW
5b3h_D1e-6216853025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486017.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0D2Q1180.0A0A0D2Q118_GOSRA; Uncharacterized protein
STRINGGorai.001G192800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]