PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G192900.1
Common NameB456_001G192900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 442aa    MW: 48031 Da    PI: 6.6957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G192900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.4e-30102158259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK vkg+ef rsYYrCt+++C+vkk++e+s+ d+k+v+++Y g+H+h 
  Gorai.001G192900.1 102 EDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCQVKKQLEHSH-DGKMVDTVYFGQHDHA 158
                         7***************************************9.***************7 PP
2WRKY105.23.3e-33273331159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d k+v++tYeg+H+h+
  Gorai.001G192900.1 273 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERASHDAKLVITTYEGKHDHD 331
                         58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.38996160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-2697160IPR003657WRKY domain
SuperFamilySSF1182904.45E-2499160IPR003657WRKY domain
SMARTSM007746.5E-34101159IPR003657WRKY domain
PfamPF031063.8E-23102157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-35260333IPR003657WRKY domain
SuperFamilySSF1182904.58E-29266333IPR003657WRKY domain
PROSITE profilePS5081135.921268333IPR003657WRKY domain
SMARTSM007741.1E-38273332IPR003657WRKY domain
PfamPF031064.4E-26274330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVSLGECVTD EVGTDKVQSP DAGSHALQQT SDSKIQSSQS DEGRGTLALI SEENPLPISV  60
IHASQSQQQG AYSMTSKKQS LTPSPSPGID GSSPIVREKA SEDGYNWRKY GQKLVKGNEF  120
VRSYYRCTHP NCQVKKQLEH SHDGKMVDTV YFGQHDHAKP LNPPVAVGFV VSVVEERLDN  180
ASPTVIKDKS LGAHIQTPRL IEPGDSSQPL PIAASEDVKS KSNGMQNIAG NDDCHLISKR  240
RKKESDNVDV SPVHKPTSES PMVIKTLSEV DIVNDGYRWR KYGQKLVKGN PNPRSYYRCS  300
NPGCPVKKHV ERASHDAKLV ITTYEGKHDH DLPPTRTVTY NIIGLNVDSA AHNSESGTKV  360
EERETINSSS GAENKPSEQS NGESRTKLEV SGTVHVCTVD APTLGPESGS NEQRSGKLDH  420
NEESEVVGYT AHSKSSSQNT E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-37103334175WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486027.10.0PREDICTED: LOW QUALITY PROTEIN: WRKY transcription factor 1
SwissprotQ9SI375e-95WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0D2M0K70.0A0A0D2M0K7_GOSRA; Uncharacterized protein
STRINGGorai.001G192900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-94zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]