PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G193500.1

Common Name

B456_001G193500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 93aa MW: 10897.8 Da PI: 10.0823

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G193500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	44	85	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + +k +Ka +L + ++Y++sLq Gorai.001G193500.1 44 KVRREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 85 78*****************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00025	5.9E-11	2	45	IPR006689	Small GTPase superfamily, ARF/SAR type
Gene3D	G3DSA:3.40.50.300	1.7E-5	2	40	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00328	8.4E-14	7	31	IPR006689	Small GTPase superfamily, ARF/SAR type
PRINTS	PR00328	8.4E-14	34	59	IPR006689	Small GTPase superfamily, ARF/SAR type
PROSITE profile	PS50888	13.186	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.03E-14	35	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-5	40	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-13	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.37E-7	43	89	No hit	No description
Pfam	PF00010	9.4E-7	44	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005525	Molecular Function	GTP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
RLAQHQPTQY PTLEELSIGM IKFKAFDLGC HQIARRVWKD YYAKVRREKI SERMKYLQDL 60 VPGCNKITDK AGMLNEIINY VQSLQRQVEV KK*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX585276	7e-66	JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486176.1	5e-64	PREDICTED: GTP-binding protein SAR1-like
Swissprot	P52885	1e-23	SAR1_TOBAC; GTP-binding protein SAR1
TrEMBL	A0A0D2Q138	1e-62	A0A0D2Q138_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.001G193500.1	2e-63	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16325	3	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-24	cryptochrome-interacting basic-helix-loop-helix 1

Link Out ? help Back to Top
Phytozome	Gorai.001G193500.1

Publications ? help Back to Top
Hanton SL, et al. Plant Sar1 isoforms with near-identical protein sequences exhibit different localisations and effects on secretion. Plant Mol. Biol., 2008. 67(3): p. 283-94 [PMID:18322804] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]