PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G195600.6
Common NameB456_001G195600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 245aa    MW: 26769.1 Da    PI: 7.9007
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G195600.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.41e-124873126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C++f+rtG C yG++C+F+H+
  Gorai.001G195600.6 48 PGEPDCSYFLRTGSCGYGSNCRFNHP 73
                        5789*********************9 PP
2zf-CCCH37.83.1e-1292116327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C +f++tGtCkyG++Ck++H++
  Gorai.001G195600.6  92 QPDCGYFLKTGTCKYGSTCKYHHPK 116
                         789********************96 PP
3zf-CCCH39.11.3e-12139161527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          C++++rtG Ck+G  CkF+H++
  Gorai.001G195600.6 139 SCPYYMRTGSCKFGVACKFHHPQ 161
                         6********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0424775IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-74774IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-104973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-65373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.52189117IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-689116IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4136161IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5139160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPDNRQVQNN AVSNETADKI EEAIMRLKIN DNNQEVGVSR SASYPDRPGE PDCSYFLRTG  60
SCGYGSNCRF NHPVYDAQNG QYREELPERI GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNDLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QPASPGAGLP ANAVGSSILP  180
PSGVPYVGGL PSWSLPRPPH VSGPRVQTQS YMPVVVSPSQ NTIPAHGWST YMVSEFFLCS  240
VMPI*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5805627e-59JX580562.1 Gossypium hirsutum clone NBRI_GE13012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486550.11e-172PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD91e-84C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D2NBN20.0A0A0D2NBN2_GOSRA; Uncharacterized protein
STRINGGorai.001G195600.11e-172(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-87C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]