PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G197300.1

Common Name

B456_001G197300, LOC105800379

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 114aa MW: 12470.5 Da PI: 6.0625

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G197300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.5	2.5e-12	43	78	18	52
G2-like 18 veqLGG.sekAtPktilelmkvkgLtlehvkSHLQk 52 v+ +G s +AtPk+i+elm+v+gLt+++vkSH + Gorai.001G197300.1 43 VSIMGPqSSVATPKQIRELMQVDGLTNDEVKSHSFM 78 5555431358***********************655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-8	43	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-9	51	76	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MATSDECCSV QLIDGDGSFN GTGIESFIKE VKLHECGLSY TVVSIMGPQS SVATPKQIRE 60 LMQVDGLTND EVKSHSFMSR CLVSVHYFGL KLLVVGICQW KQPCFCSCIP FFH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486935.1	3e-79	PREDICTED: uncharacterized protein LOC105800379
TrEMBL	A0A0D2PU44	6e-78	A0A0D2PU44_GOSRA; Uncharacterized protein
STRING	Gorai.001G197300.1	1e-78	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17996	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	7e-11	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G197300.1
Entrez Gene	105800379

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]