PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G197500.1

Common Name

B456_001G197500, LOC105800414

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 329aa MW: 36424.8 Da PI: 5.2639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G197500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57	3.4e-18	37	86	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f++Lr+++P++ ++K +Ka+ L +++eYI+ Lq Gorai.001G197500.1 37 RSKHSETEQRRRSKINERFQTLRDIIPQN----DQKRDKASFLLEVIEYIQFLQ 86 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.8E-24	32	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.511	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.39E-17	35	90	No hit	No description
SuperFamily	SSF47459	1.09E-19	35	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-16	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	41	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MVKSVASAQL HQEEEDDDGE TVKVEGKGSE QKANSNRSKH SETEQRRRSK INERFQTLRD 60 IIPQNDQKRD KASFLLEVIE YIQFLQEKLQ IYEGSYQGWS QEATKLIPWR NHRGLAESFI 120 DHSQIMNNGS NCENDGVIPS MVANAQNSID SDLGDAAVFK TPDHPPVSAT STVSMQTQSN 180 TIATHGRGSI TFHESASDSE NMVHQPQFQS WQSRDCLSES AVVNNSAIAR EDLTIRDESV 240 DLSSAYSQGI RNSLTQVLQS SGVDISQASI SVKIDVGKRV AAGMTSTPSS SKEKDIQYTS 300 NQEMAQTGVR SYTEESDQAY KRHRTGKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486994.1	0.0	PREDICTED: transcription factor BIM3-like
TrEMBL	A0A0D2Q131	0.0	A0A0D2Q131_GOSRA; Uncharacterized protein
STRING	Gorai.001G197500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17167	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	7e-61	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Gorai.001G197500.1
Entrez Gene	105800414

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]