PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G199200.1

Common Name

B456_001G199200, LOC105800657

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 248aa MW: 27769 Da PI: 4.7959

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G199200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.4e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l +++e++V++WFqNrRa+ k+ Gorai.001G199200.1 91 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	103.6	1.4e-33	90	153	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Gorai.001G199200.1 90 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 153 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-17	86	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.803	87	152	IPR001356	Homeobox domain
SMART	SM00389	7.1E-15	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.85E-18	90	152	IPR009057	Homeodomain-like
Pfam	PF00046	3.6E-19	91	151	IPR001356	Homeobox domain
CDD	cd00086	4.17E-14	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MIMEWEDQEN QNQREILNVN VNNGGVMYVK VMTDEQLETL REQIAVYAAI CEQLVEMHKN 60 LTAQQDLAGG RLGSLYCDPL MTSAGHKITA RQRWTPTPVQ LQILERIFDQ GTGTPSKQKI 120 KEITSELSQH GQISETNVYN WFQNRRARSK RKQLGSSSNN AESELETEVE SPNEKKTKPE 180 NLLSGQNPAP RAEDLCFQNP EITSELHFLG VMSNPTTFNG DEHLSGKMGM PGSYNIYDQA 240 GDYGMAG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487363.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-109	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0D2M0X0	0.0	A0A0D2M0X0_GOSRA; Uncharacterized protein
STRING	Gorai.001G199200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-110	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Gorai.001G199200.1
Entrez Gene	105800657

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]