PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G199200.3

Common Name

B456_001G199200, LOC105800657

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 168aa MW: 18629.6 Da PI: 6.5215

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G199200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.1	1.1e-21	11	71	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l +++e++V++WFqNrRa+ k+ Gorai.001G199200.3 11 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 71 89***************99************************************97 PP
2	Wus_type_Homeobox	104.6	6.2e-34	10	73	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Gorai.001G199200.3 10 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 73 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-18	6	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.803	7	72	IPR001356	Homeobox domain
SMART	SM00389	7.1E-15	9	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-18	10	72	IPR009057	Homeodomain-like
CDD	cd00086	3.39E-14	11	73	No hit	No description
Pfam	PF00046	1.7E-19	11	71	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MTSAGHKITA RQRWTPTPVQ LQILERIFDQ GTGTPSKQKI KEITSELSQH GQISETNVYN 60 WFQNRRARSK RKQLGSSSNN AESELETEVE SPNEKKTKPE NLLSGQNPAP RAEDLCFQNP 120 EITSELHFLG VMSNPTTFNG DEHLSGKMGM PGSYNIYDQA GDYGMAG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	72	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487363.1	1e-123	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	6e-73	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0D2PU96	1e-122	A0A0D2PU96_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5RM97	1e-122	A0A2P5RM97_GOSBA; Uncharacterized protein
STRING	Gorai.001G199200.1	1e-122	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-75	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Gorai.001G199200.3
Entrez Gene	105800657

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]