PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G210000.1
Common NameB456_001G210000, LOC105801826
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 115aa    MW: 12397.6 Da    PI: 7.5083
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G210000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.59.3e-111213656
             G2-like 36 mkvkgLtlehvkSHLQkYRla 56
                        m+v+gLt+++vkSHLQkYRl+
  Gorai.001G210000.1  1 MQVDGLTNDEVKSHLQKYRLH 21
                        9******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-9124IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-8121IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MQVDGLTNDE VKSHLQKYRL HTRRLLPTTT TTTLANQSGL VLGGGHAWMC QDQFGESSKG  60
SSSQSGSPQG PLQLATNTRG TSTTGCESIE DDEDAKSECY SWKSHVQKPR KNNA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9646127e-54JX964612.1 Gossypium hirsutum clone NBRI_TRANS-881 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488587.12e-80PREDICTED: uncharacterized protein LOC105801826
RefseqXP_012488595.12e-80PREDICTED: uncharacterized protein LOC105801826
SwissprotQ9FX842e-17HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A0D2Q1X14e-79A0A0D2Q1X1_GOSRA; Uncharacterized protein
STRINGGorai.001G210000.16e-80(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2069636
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]