PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G223800.4
Common NameB456_001G223800, LOC105803687
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 402aa    MW: 43843.4 Da    PI: 4.746
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G223800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ +++++ + +C+++  +lC +C  + H+       H++
  Gorai.001G223800.4  4 ICDFCGNQPSTVYCQSDAACLCLSCDRNVHSAnalskrHSR 44
                        7*****************************65677777765 PP
2zf-B_box21.26.1e-074689441
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                          C++++++++   C + ++ lC++C   +H g       H++++
  Gorai.001G223800.4 46 LLCERCNSQPAFVRCVEERVSLCQNCDWMGH-GtstlnstHRRQT 89
                        57*****************************.5477888887765 PP
3CCT639.3e-22344387144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Gorai.001G223800.4 344 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 387
                         889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.499147IPR000315B-box-type zinc finger
CDDcd000218.64E-9447No hitNo description
SMARTSM003365.6E-9447IPR000315B-box-type zinc finger
PfamPF006431.5E-5444IPR000315B-box-type zinc finger
PROSITE profilePS501198.7024390IPR000315B-box-type zinc finger
CDDcd000219.89E-64790No hitNo description
SMARTSM003360.264890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.418344386IPR010402CCT domain
PfamPF062032.0E-16344386IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGYICDFCGN QPSTVYCQSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
VEERVSLCQN CDWMGHGTST LNSTHRRQTI NCYSGCPSSA ELSSIWSFFS QSPSAGESTC  120
EQELRQMSIT ETSWCPTENT ISQNDTGDAE VNRDYNVDRG SSWSGSSIPE LRSGPGLLDQ  180
PAGTTDTSLS ECPGVCKDDL YDDFNMDEID LNLEKYEELF GVTLNHSEEL FGNGGIDSLF  240
GTKDMSATDS YQGAVAAEGS SVGLVNAIQP ACSNAASADS MMSNKTNSIL CFTARQDHSS  300
FSFSGLTGES SGGDYQDCGA SSMLLMGEAP WCPPSEVPFS SATRSDAVMR YKEKKKTRKF  360
EKRVRYASRK ARADVRKRVK GRFVKAGDDY DYDPLNPTRS C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.9230.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487421650.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491522.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X2
SwissprotQ9SSE51e-148COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D2Q2R80.0A0A0D2Q2R8_GOSRA; Uncharacterized protein
STRINGGorai.001G223800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-112CONSTANS-like 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]