PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G227800.1

Common Name

B456_001G227800, LOC105804132

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 226aa MW: 25744.1 Da PI: 8.0847

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G227800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.9e-27	54	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Y eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++k + +e+++r++ r gCka++ vk+ek+gkw+vt++e+eHnH+l+ Gorai.001G227800.1 54 KYYIEYARRIGFMVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKWVVTRFEKEHNHPLM 143 69**************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-25	54	143	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSLGSEETLH SWDLDKEGGK ADSSVEEKTA EREGSEILEP YVGMEFESED DAKKYYIEYA 60 RRIGFMVRIM QRRRSGIDGR TLARRLGCNK QGFSPNHKGT LGQEKKPRPS AREGCKATIL 120 VKMEKTGKWV VTRFEKEHNH PLMITANGFN TTGDKDKKIE ELTMELAHQE QLCSAYREKL 180 FAFINNVEKQ TEELSSKIEV IVDNVRKLEA ERQRFTHRSA GSLGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492077.1	1e-167	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
TrEMBL	A0A0D2M1U4	1e-166	A0A0D2M1U4_GOSRA; Uncharacterized protein
STRING	Gorai.001G227800.1	1e-167	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	5e-76	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G227800.1
Entrez Gene	105804132

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]