PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G231300.3
Common NameB456_001G231300, LOC105804451
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 163aa    MW: 18770.5 Da    PI: 10.8636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G231300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75e-1262103351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Gorai.001G231300.3  62 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 103
                         79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-661104IPR001471AP2/ERF domain
SMARTSM003801.2E-461118IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-862106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-664108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MPLDSINRMH GKSIPMVSCG SPNVSGSGSS KEHHNQPFPG QLIKRRKRHR RKHVQNQEPC  60
LMRGVYFKNM KWQAAIKVDK KQIHLGTVGS QEEAARLYDR AAFMCGREPN FELSKEEKQE  120
LRNFKWDEFL AYTRHSITNK KSKRRLGIRP QKSSEPAIEN GQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492539.11e-119PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012492549.11e-119PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012492557.11e-119PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016711913.11e-119PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016711914.11e-119PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016711915.11e-119PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP95e-47ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0D2LWB81e-118A0A0D2LWB8_GOSRA; Uncharacterized protein
TrEMBLA0A0D2PWB01e-118A0A0D2PWB0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8LBD21e-118A0A1U8LBD2_GOSHI; ethylene-responsive transcription factor-like protein At4g13040
STRINGGorai.001G231300.11e-119(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-49ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]