PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G243700.1
Common NameB456_001G243700, LOC105766747
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 311aa    MW: 34774.6 Da    PI: 9.9394
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G243700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind334.92.1e-1023531016301
           GAGA_bind  16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtk 106
                         ++++l   +++++ms++aerda+i+ern+a+se+k+a+a+rd+a++qrdkalaer+ al+erdn+l+ l+ +e +  ++ p+g+++ +g +
  Gorai.001G243700.1  35 QSNALV--MNKKIMSILAERDAAIQERNIAISERKEALAARDEALQQRDKALAERDSALIERDNALAVLQCRESA--KNFPFGSGIQRGRT 121
                         335555..99*************************************************************9887..78899****9*999 PP

           GAGA_bind 107 sidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlv 197
                         +++ + +   +  +d++ + +e++ ++alp+++ ++ + ++  +k+++ ++   +k  +k kk  e+ +++v++e   ++ k+e++s  ++
  Gorai.001G243700.1 122 CMHPSYH---SSDTDETLN-HEMHVTNALPVSTIPSAEGKSCPVKRTKVNRAVSSKSPRKIKKVAEDLNRQVDTEV--RKCKSEWNSEHIG 206
                         9994433...333444444.79*************999999999988888888889999****9********9999..57*********** PP

           GAGA_bind 198 lngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdh 288
                         l  +++De+++ vPvCsCtG++r CYkWGnGGWqS+CCtt+iS yPLP+++++r+aR++grKmS+++f+klL++LaaeGyd+s+p+DLk++
  Gorai.001G243700.1 207 LSLINFDETKISVPVCSCTGVPRHCYKWGNGGWQSSCCTTSISSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGYDVSKPLDLKTY 297
                         ******************************************************************************************* PP

           GAGA_bind 289 WAkHGtnkfvtir 301
                         WA+HGtn+++ti+
  Gorai.001G243700.1 298 WARHGTNRYITIK 310
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-1471310IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-941310IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDGAGQLENG RYKLDRYKGA HPPWNMMPQH HVKEQSNALV MNKKIMSILA ERDAAIQERN  60
IAISERKEAL AARDEALQQR DKALAERDSA LIERDNALAV LQCRESAKNF PFGSGIQRGR  120
TCMHPSYHSS DTDETLNHEM HVTNALPVST IPSAEGKSCP VKRTKVNRAV SSKSPRKIKK  180
VAEDLNRQVD TEVRKCKSEW NSEHIGLSLI NFDETKISVP VCSCTGVPRH CYKWGNGGWQ  240
SSCCTTSISS YPLPQMPNKR HARVGGRKMS GSVFTKLLSR LAAEGYDVSK PLDLKTYWAR  300
HGTNRYITIK *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441780.10.0PREDICTED: protein BASIC PENTACYSTEINE4 isoform X1
RefseqXP_012441785.10.0PREDICTED: protein BASIC PENTACYSTEINE4 isoform X2
RefseqXP_012441790.10.0PREDICTED: protein BASIC PENTACYSTEINE4 isoform X2
RefseqXP_016705836.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X2
RefseqXP_016705837.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X2
SwissprotQ8S8C61e-131BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0D2M2M10.0A0A0D2M2M1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KTS00.0A0A1U8KTS0_GOSHI; protein BASIC PENTACYSTEINE4-like isoform X2
STRINGGorai.001G243700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-134basic pentacysteine 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]