PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G243700.5
Common NameB456_001G243700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 220aa    MW: 24456.6 Da    PI: 7.97
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G243700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind83.86.4e-261417416184
           GAGA_bind  16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtk 106
                         ++++l   +++++ms++aerda+i+ern+a+se+k+a+a+rd+a++qrdkalaer+ al+erdn+l+ l+ +e +  ++ p+g+++ +g +
  Gorai.001G243700.5  14 QSNALV--MNKKIMSILAERDAAIQERNIAISERKEALAARDEALQQRDKALAERDSALIERDNALAVLQCRESA--KNFPFGSGIQRGRT 100
                         335555..99*************************************************************9887..78899****9*999 PP

           GAGA_bind 107 sidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184
                         +++ + +   +  +d++ + +e++ ++alp+++ ++ + ++  +k+++ ++   +k  +k kk  e+ +++v++e a+
  Gorai.001G243700.5 101 CMHPSYH---SSDTDETLN-HEMHVTNALPVSTIPSAEGKSCPVKRTKVNRAVSSKSPRKIKKVAEDLNRQVDTEFAP 174
                         9994433...333444444.79*************99999999998888888888889999**999999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-91219IPR010409GAGA-binding transcriptional activator
PfamPF062171.0E-172167IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MQWNMMPQHH VKEQSNALVM NKKIMSILAE RDAAIQERNI AISERKEALA ARDEALQQRD  60
KALAERDSAL IERDNALAVL QCRESAKNFP FGSGIQRGRT CMHPSYHSSD TDETLNHEMH  120
VTNALPVSTI PSAEGKSCPV KRTKVNRAVS SKSPRKIKKV AEDLNRQVDT EFAPAQEFPD  180
IATSGEMVDG SHLVALPAYH HTHCHRCQTS GTPEWVGVR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441801.11e-162PREDICTED: protein BASIC PENTACYSTEINE4 isoform X4
RefseqXP_016705839.11e-162PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X4
SwissprotQ8S8C63e-46BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0D2Q3Y81e-163A0A0D2Q3Y8_GOSRA; Uncharacterized protein
STRINGGorai.001G243700.11e-118(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-48basic pentacysteine 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]