PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G249400.1
Common NameB456_001G249400, LOC105767444
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 510aa    MW: 56431.7 Da    PI: 8.7934
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G249400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-1759105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Gorai.001G249400.1  59 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                         688*****************************.************986 PP
2Myb_DNA-binding57.62.9e-18111157148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+ Ed++++++v ++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Gorai.001G249400.1 111 KGPWTQKEDDKIIELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                         79******************************.*************97 PP
3Myb_DNA-binding52.41.2e-16163206146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Gorai.001G249400.1 163 KDAWTMEEELALMNAHRTYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.81954105IPR017930Myb domain
SMARTSM007171.2E-1458107IPR001005SANT/Myb domain
PfamPF002491.4E-1559105IPR001005SANT/Myb domain
SuperFamilySSF466892.51E-1560115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-2261117IPR009057Homeodomain-like
CDDcd001679.96E-1362105No hitNo description
PROSITE profilePS5129431.635106161IPR017930Myb domain
SuperFamilySSF466891.47E-31108204IPR009057Homeodomain-like
SMARTSM007172.4E-17110159IPR001005SANT/Myb domain
PfamPF002498.6E-18111157IPR001005SANT/Myb domain
CDDcd001675.11E-15113157No hitNo description
Gene3DG3DSA:1.10.10.605.2E-27118164IPR009057Homeodomain-like
SMARTSM007172.9E-15162210IPR001005SANT/Myb domain
PROSITE profilePS5129421.801162212IPR017930Myb domain
PfamPF002494.2E-15163206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-23165212IPR009057Homeodomain-like
CDDcd001671.69E-11165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAELRLEERC LYKKQLTTAS SSSVSEGGGN AVVKSPGVSS PAPTSPNHRR TTGPIRRAKG  60
GWTPEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQKEDD  120
KIIELVSKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTMEE ELALMNAHRT  180
YGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVSKNGLQ NGTKDIRTPT  240
TQNFPVFLKK ESGSTAQTSS GTTDTCKLEE DGKDQLESSA PVQDMTASTN VIPEEPTDTE  300
STECKLQSVD INPCYCTSES GGKFGSHRIS SQVVEILKEQ VGLDTPTYCS LCCDESPRSQ  360
HEWTSTPITS PISFFTPPRV KGSGLSTHSP EYILRIAAKS FLNTPSIFRK RKMGAQVLTL  420
PNKKGKLNEE IGKDGIQLSG EQQRTENSSE QAQFCDGDPC ESPACQGNSP TLPNSTVFNA  480
SPPYRLRSKR TAVLMSVERK LELTFDKEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-70582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-70582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442444.10.0PREDICTED: myb-related protein A-like
RefseqXP_012442451.10.0PREDICTED: myb-related protein A-like
SwissprotQ8H1P91e-156MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A0D2Q4450.0A0A0D2Q445_GOSRA; Uncharacterized protein
STRINGGorai.001G249400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-150myb domain protein 3r-3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]