PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G251100.1
Common NameB456_001G251100, LOC105771723
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 199aa    MW: 22234 Da    PI: 6.8728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G251100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000114163123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ F++   L  H+++H
  Gorai.001G251100.1 41 YTCAFCKREFRSAQALGGHMNVH 63
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-63867No hitNo description
PfamPF139124.8E-64165IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0324168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MERSDWSTSK MGKWEFNRLD LVELEGEQYS CCKSPWPPKF YTCAFCKREF RSAQALGGHM  60
NVHRKDRARL RLFSSWVLES QNPNKPNSNP NHPNPINSSS PSDDFSVYPH HSLLSPLFPT  120
PSSSVLTYGE NPKMSLNPQL GDLSQENTMT PFPAGVENLK VHAPNYKLEV GGVTGLDLVT  180
GFGDTKEVLD LDLRLGHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-123663229superman protein
2l1o_A3e-123663229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5801371e-53JX580137.1 Gossypium hirsutum clone NBRI_GE12506 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448581.11e-146PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_012448584.11e-146PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0D2QVQ31e-145A0A0D2QVQ3_GOSRA; Uncharacterized protein
STRINGGorai.001G251100.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-22zinc finger protein 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]