PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G274500.1

Common Name

B456_001G274500, LOC105769867

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 246aa MW: 27879 Da PI: 10.0445

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G274500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.6	9e-35	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 +p G+rF+Ptdeelvv+yLk+k+ + +l++ +vi+e+d+++++Pw+Lp v +++ yfFs+r + +++k+++r ++ sgyWk gk+k Gorai.001G274500.1 14 MPIGYRFRPTDEELVVHYLKRKALNLPLPA-SVIPEFDVFQTDPWSLPGDV---KEKRYFFSSRYGNDSNNKKRKRvVAGSGYWKPIGKEK 100 699*************************.99***********554...4578**9999999999997888******* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l++ ++++vg+++ L+f + + + +k +W++h++rl Gorai.001G274500.1 101 PILASgTNQVVGMRQALIFCERKLCTDTKPRWLLHQFRL 139 9967778********999999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-41	10	164	IPR003441	NAC domain
PROSITE profile	PS51005	41.58	14	165	IPR003441	NAC domain
Pfam	PF02365	1.7E-19	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEGQRFVVNG GIKMPIGYRF RPTDEELVVH YLKRKALNLP LPASVIPEFD VFQTDPWSLP 60 GDVKEKRYFF SSRYGNDSNN KKRKRVVAGS GYWKPIGKEK PILASGTNQV VGMRQALIFC 120 ERKLCTDTKP RWLLHQFRLV GSADQTQMTK REWHGDWVVF KVIQRKRNAK KHGVICSNSQ 180 TTRAAAYMPS CIDFTVEDSS MFGPPQPTSP SSSEITEVSP NGLLDQEESS AAVITTFLHY 240 CMRKQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-30	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-30	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-30	12	171	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-30	12	171	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-30	12	171	15	171	NAC domain-containing protein 19
4dul_B	9e-30	12	171	15	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1901	1e-107	flower\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589385	1e-41	JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446267.1	0.0	PREDICTED: NAC transcription factor ONAC010
TrEMBL	A0A0D2PXL4	0.0	A0A0D2PXL4_GOSRA; Uncharacterized protein
STRING	Gorai.001G274500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7874	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-45	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Gorai.001G274500.1
Entrez Gene	105769867

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]