PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G004200.2
Common NameB456_002G004200, LOC105772861
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 213aa    MW: 23380.3 Da    PI: 5.5576
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G004200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.6e-07433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+  +++fC  ++  lC++C ++ H
  Gorai.002G004200.2  4 LCDVCESAAAIIFCAADEAALCRSCDEKVH 33
                        7**************************998 PP
2zf-B_box28.53.2e-095291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Gorai.002G004200.2 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                        5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
SMARTSM003361.7E-8147IPR000315B-box-type zinc finger
CDDcd000219.49E-6345No hitNo description
PfamPF006431.1E-5341IPR000315B-box-type zinc finger
PROSITE profilePS501198.9735196IPR000315B-box-type zinc finger
SMARTSM003368.4E-105196IPR000315B-box-type zinc finger
PfamPF006432.6E-75285IPR000315B-box-type zinc finger
CDDcd000214.88E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRTLCDVCES AAAIIFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPAH LEELGLQPVD  120
LNDVRKDQKW QPNFAGRENQ QNHRLSLVPA LDGNGDGDGK VGNKLIDLNT NPQRLHDQAS  180
TIQEQAMDVS SDNNHDSASV VPVGSFKREP DK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449794.11e-157PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_012449802.11e-157PREDICTED: B-box zinc finger protein 19-like isoform X2
RefseqXP_012449808.11e-157PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_012449817.11e-157PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_012449825.11e-157PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM52e-90BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D2PYN41e-155A0A0D2PYN4_GOSRA; Uncharacterized protein
STRINGGorai.002G004200.11e-151(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-72DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]