PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G004700.1
Common NameB456_002G004700, LOC105772933
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 208aa    MW: 22977.8 Da    PI: 4.8231
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G004700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-061141636
            zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg 36
                        C+ ++++e++ fC  ++  lC  C  + H+ 
  Gorai.002G004700.1 11 CEVCDKEEAIVFCPADEAALCGVCDHNVHHA 41
                        ***************************9743 PP
2zf-B_box31.82.9e-1059100338
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                          + C+ ++ek++ lfC++++  lC++C   +Hk       H+
  Gorai.002G004700.1  59 SPLCDICQEKRALLFCQEDRAILCRECDIPIHKAneqttkHN 100
                         689*****************************8766666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.509653IPR000315B-box-type zinc finger
SMARTSM003364.7E-10653IPR000315B-box-type zinc finger
CDDcd000212.12E-41153No hitNo description
PROSITE profilePS5011910.02557104IPR000315B-box-type zinc finger
SMARTSM003363.0E-1457104IPR000315B-box-type zinc finger
PfamPF006431.6E-859100IPR000315B-box-type zinc finger
CDDcd000216.36E-960104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEQKRRMKIW CEVCDKEEAI VFCPADEAAL CGVCDHNVHH ANKLATKHCR FALLQPDDSP  60
LCDICQEKRA LLFCQEDRAI LCRECDIPIH KANEQTTKHN RFLLTGVKLS SSSSSSSSST  120
GFPPALNTVS SSSNGGYGGQ TICSEAETTS QSNNEIEKPL TTYRIEHNYT IGDDDVLVSM  180
SISEYLMETL PGWRVDDFLE PSSYAAC*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153041e-153JX615304.1 Gossypium hirsutum clone NBRI_GE59224 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449903.11e-155PREDICTED: B-box zinc finger protein 20-like isoform X1
SwissprotQ0IGM77e-67BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A0D2QY671e-154A0A0D2QY67_GOSRA; Uncharacterized protein
STRINGGorai.002G004700.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.17e-67DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  3. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]